EdwardsLab

chromsyn. Chromosome-level synteny plotting using orthologous regions

SLiMSuite. Open source short linear motif discovery and sequence analysis

buscomp. BUSCOMP: BUSCO Compiler and Comparison tool

diploidocus. Diploid genome assembly analysis tools

pafscaff. PAFScaff: Pairwise mApping Format reference-based scaffold anchoring and super-scaffolding.

numtfinder. NUMTFinder: Nuclear mitochondrial fragment (NUMT) search tool

gapspanner. Genome assembly gap long read support and reassembly tool

saaga. SAAGA: Summarise, Annotate & Assess Genome Annotations

depthsizer. Read-depth based genome size prediction

depthkopy. Read-depth based copy number estimation

taxolotl. Genome assembly taxonomy summary and assessment tool.

snapper. Genome-wide SNP Mapper and Genome Comparison Tool

synbad. Synteny-based scaffolding adjustment

SLiMEnrich. SLiMEnrich Shiny App for prediction of domain-motif interactions

sharpclaw. Synteny, Homology And Repeat Pre-curation for Chromosome-Level Assembly Workflows

quenda. Quenda: Quality Estimation N Depth Analysis

MerquryRising. Merqury parsing and comparison for genome assembly purging QC

wgs2tree. A snakemake workflow for generating consensus phylogenomic trees from whole genome sequencing data

depthcharge. Genome assembly quality control and misassembly repair

telociraptor. Telomere Prediction and Genome Assembly Editing Tool

SLiMScape. Cytoscape plugin for discovery and analysis of Short Linear Motifs

deduce. Jupyter Notebook