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Dublin, Ireland

EdwardsLab

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@slimsuite

Bioinformatics, biodiversity genomics and molecular evolution lab of Dr Richard Edwards - Dublin, UWA Oceans Institute & UNSW

www.slimsuite.unsw.edu.au

chromsyn. Chromosome-level synteny plotting using orthologous regions

32

SLiMSuite. Open source short linear motif discovery and sequence analysis

29

buscomp. BUSCOMP: BUSCO Compiler and Comparison tool

22

diploidocus. Diploid genome assembly analysis tools

14

pafscaff. PAFScaff: Pairwise mApping Format reference-based scaffold anchoring and super-scaffolding.

9

numtfinder. NUMTFinder: Nuclear mitochondrial fragment (NUMT) search tool

6

gapspanner. Genome assembly gap long read support and reassembly tool

5

saaga. SAAGA: Summarise, Annotate & Assess Genome Annotations

5

depthsizer. Read-depth based genome size prediction

4

depthkopy. Read-depth based copy number estimation

2

taxolotl. Genome assembly taxonomy summary and assessment tool.

2

snapper. Genome-wide SNP Mapper and Genome Comparison Tool

2

synbad. Synteny-based scaffolding adjustment

2

SLiMEnrich. SLiMEnrich Shiny App for prediction of domain-motif interactions

2

sharpclaw. Synteny, Homology And Repeat Pre-curation for Chromosome-Level Assembly Workflows

1

quenda. Quenda: Quality Estimation N Depth Analysis

1

MerquryRising. Merqury parsing and comparison for genome assembly purging QC

1

wgs2tree. A snakemake workflow for generating consensus phylogenomic trees from whole genome sequencing data

1

depthcharge. Genome assembly quality control and misassembly repair

1

telociraptor. Telomere Prediction and Genome Assembly Editing Tool

1

SLiMScape. Cytoscape plugin for discovery and analysis of Short Linear Motifs

1

deduce. Jupyter Notebook

1