Sigve Nakken

pcgr. Personal Cancer Genome Reporter (PCGR)

cpsr. Cancer Predisposition Sequencing Reporter (CPSR)

gvanno. Generic human DNA variant annotation pipeline

oncoEnrichR. Explore the cancer relevance of your gene list

vcf2tsvpy. Genomic VCF to tab-separated values

pharmOncoX. Targeted and non-targeted anticancer drugs and drug regimens

cacao. Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

phenOncoX. Crossmapped phenotype ontologies for the oncology domain

geneOncoX. Human gene annotations for the oncology domain

gwasOncoX. Cancer variant data from genome-wide association studies (GWAS)

cancerHotspots. R data package with mutational hotspots in cancer

plsd. Prospective Lynch Syndrome Database (PLSD) - cumulative risk for cancer by age, genetic variant, and gender

vcfmerge. MuTect2 + Strelka somatic VCF merger

sv_anno. Processing and annotation of somatic structural variants

literatureVault. Biomedical literature reference data for precision cancer medicine

portfolio. 🚀 Create a dynamic portfolio by just providing your GitHub username.

gganatogram. Create anatograms using ggplot2

vcfhelpR. Functions to order, write and crossmap VCF/BED records in R

epacts-docker. Dockerized version of EPACTS

gtexRNA. Gene expression retrieval with GTEx API