This is your work, valued

Oslo, Norway

Sigve Nakken

Expert
@sigven

research scientist - precision cancer medicine // genomics // cancer data science

sigven.github.io

pcgr. Personal Cancer Genome Reporter (PCGR)

281

cpsr. Cancer Predisposition Sequencing Reporter (CPSR)

64

gvanno. Generic human DNA variant annotation pipeline

60

oncoEnrichR. Explore the cancer relevance of your gene list

54

vcf2tsvpy. Genomic VCF to tab-separated values

49

pharmOncoX. Targeted and non-targeted anticancer drugs and drug regimens

31

cacao. Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

21

phenOncoX. Crossmapped phenotype ontologies for the oncology domain

16

geneOncoX. Human gene annotations for the oncology domain

6

gwasOncoX. Cancer variant data from genome-wide association studies (GWAS)

3

cancerHotspots. R data package with mutational hotspots in cancer

3

plsd. Prospective Lynch Syndrome Database (PLSD) - cumulative risk for cancer by age, genetic variant, and gender

3

vcfmerge. MuTect2 + Strelka somatic VCF merger

2

sv_anno. Processing and annotation of somatic structural variants

2

literatureVault. Biomedical literature reference data for precision cancer medicine

1

portfolio. 🚀 Create a dynamic portfolio by just providing your GitHub username.

1

gganatogram. Create anatograms using ggplot2

1

vcfhelpR. Functions to order, write and crossmap VCF/BED records in R

1

epacts-docker. Dockerized version of EPACTS

1

gtexRNA. Gene expression retrieval with GTEx API

1