Kat Holt

srst2. Short Read Sequence Typing for Bacterial Pathogens

plotTree. R

RedDog. Python

AMRrules. Organism-specific interpretation of AMR genotypes

reddog-nf. pipeline for read mapping, snp calling and annotation for bacterial genomes

NGSchallenge. Data for the outbreak investigation software challenge session at the ASM NGS 2015 conference

typhoid.

R_project_template. Template repo for R-based analysis projects