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Kat Holt

Elite
@katholt
holtlab.net

srst2. Short Read Sequence Typing for Bacterial Pathogens

150

plotTree. R

68

RedDog. Python

38

AMRrules. Organism-specific interpretation of AMR genotypes

20

reddog-nf. pipeline for read mapping, snp calling and annotation for bacterial genomes

13

NGSchallenge. Data for the outbreak investigation software challenge session at the ASM NGS 2015 conference

7

typhoid.

1

R_project_template. Template repo for R-based analysis projects

1