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@xuesoso

Bioinformatics Scientist. Stanford Bioengineering PhD.

SOSODE. SOSODE is a neovim-based development environment for interactive data analysis and scripting.

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DensityPlot. A simple python plotting package for density and scatter plotting.

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nheatmap. A customizable and painless way to generate neat-looking heatmap.

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singleToxoplasmaSeq. A respository that includes scripts and jupyter notebooks to re-generate analysis results of "A single-parasite transcriptional atlas of Toxoplasma gondii reveals novel control of antigen expression" (2020).

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bag_of_velocyto. Cluster submission of velocyto alignment for RNA velocity analysis.

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valgrind-m1_macos-docker. A docker build for Valgrind C debugger

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2022_ACE_Granuloma_Macrophage. Repository for scRNA-seq analysis of granuloma macrophage in the course of Salmonella Typhimurium persistent infection

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xuesoso.github.io. Personal website for Soso Xue

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