Yu Wan 万宇

GeneMates. An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences

BINF_toolkit. Handy scripts for routine bioinformatic analysis

readSimulator. Simulating paired-end short sequencing reads from circular and linear genomes

handyR. Handy functions for daily R programming

cgSNPs. Acquisition and processing core-genome SNPs

rasti. Recursive assembly-based search for target nucleotides

APDtools. Scripts for measurement and analysis of allelic physical distances in bacterial genomes (previously repository name: physDist)

NITREc. Chromosomal mutations associated with nitrofurantoin resistance in Escherichia coli

SRST2_toolkit. Supplementary tools for SRST2 and later series

PAMmaker. Pipelines creating allelic presence-absence matrices from SRST2 and ARIBA results