Samee Ullah

PyMOLfold. Plugin for folding sequences directly in PyMOL

proteindesigngroups. A curated, interactive directory of protein design research groups worldwide.

PyRosetta4-GIL-Disabled. PyRosetta4 v2026-02-06 with (Global Interpreter Lock) disabled

Alphafold3-Fedora-install.

BoltzDesign1. Python

open-visual. Python

BinderFlow. Code for running BinderFlow

ligandMPNN_Colab. ligandmpnn Colab NoteBook

pymolrc. Promela

proteinzen. All-atom generative protein design using SE(3) flow matching

germinal. Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.

RFdiffusion. Code for running RFdiffusion

MycoplasmaGenitalium. Modelling of Mycoplasma genitalium

ProBuilder. The package of ProBuilder from Longxing Cao lab

tanimoto-similarity. tanimoto-similarity

binder-design. Protein binder design using PatchDock, Rosetta, and ProteinMPNN

ProteinDesignGUI. Python

De-Novo-Protein-Design-of-Odorant-Binding-Proteins-for-VOCs-Recognition. Coure Project for Protein Design 2024 fall, ShanghaiTech