Tobias Rausch

alfred. BAM Statistics, Feature Counting and Annotation

wally. Wally: Visualization of aligned sequencing reads and contigs

ATACseq. Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

vc. A tutorial on structural variant calling for short read sequencing data

lorax. A long-read analysis toolbox for cancer and population genomics

nRex. nRex: Germline and somatic single-nucleotide, short indel and structural variant calling

sv. Structural variant calling tutorial using long-reads.

rayas. Templated insertion discovery

tenX. Tools for 10X

covid19. SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing

rdxon. Reference-free FASTQ filter for rare germline and somatic variants

repliseq. Repli-Seq analysis pipeline

kmerdbg. Scripts to build and analyze compacted de Bruijn graphs

RNAseq. RNA-Seq processing pipeline

coral. Coral: COpy-numbeR ALterations

ml2. Machine Learning

workflows. Workflows

lamp. LAMP testing (Covid screening)

allis. Allele-specific expression

circosplots. Scripts to generate circos plots

vcfaid. VCFaid: Genotype likelihood based GQ estimation

breaktracer. Tracing inserted sequence fragments at structural variant breakpoints

svcatalog. Human Genetic Structural Variants

exercise1. exercise 1

pods. Kubernetes (K8s) stuff

t-all. Scripts

indexingtests. Indexing Tests

dbg. dbg stuff

phaseBam. Phase a BAM file using a phased SNP scaffold

tobiasrausch.github.io. Homepage of Tobias Rausch