Talley Lambert

FPbase. The Fluorescent Protein Database

nd2. Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction

pycudadecon. Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy

PSFmodels. Python bindings for scalar and vectorial models of the 3D microscope point spread function.

microsim. Light microscopy simulation in python.

QtRangeSlider. Multi-handle range slider widget for PyQt/PySide

mkdocs-api-autonav. MkDocs plugin for autogenerating API docs with navigation

LLSpy. Lattice light-sheet post-processing utility.

setup-qt-libs. install libraries required to use qt on github action (does not install qt itself)

napari-ndtiffs. A napari plugin to load & deskew folders of lattice light sheet TIFFs

pycudasirecon. CUDA-accelerated reconstruction for 3D-structured-illumination

imarispy. Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer

llspy-slm. SLM binary mask generator for Lattice Light Sheet microscopy

mrc. Read and write .mrc and .dv (deltavision) image file format.

pyrepo-cookiecutter. personal repo bootstrap

tifffolder. Easily parse/access a subset of data from a folder of TIFFs

pydantic-tensorstore. Pydantic models for the TensorStore Spec

fpseq. package for working with protein sequences and mutations, and FPbase API wrapper to retrieve fluorescent protein sequences

napari. a fast, interactive, multi-dimensional image viewer for python

conda-bundler. scripts to convert conda environments into bundled apps

proto-skimage-widgets. Python

napari-dask-example. notebook demonstrating napari with dask-delayed processing

fpbasepy. Python wrapper for FPBase.org GraphQL API.

superqt. Missing widgets and components for Qt-python

hms_pyintro2. Jupyter Notebook

microvis. Python

hatch-min-requirements. Python