FASTGA. Pairwise whole genome aligner
243FASTK. A fast K-mer counter for high-fidelity shotgun datasets
146DALIGNER. Find all significant local alignments between reads
140DAZZ_DB. The Dazzler Data Base
36DEXTRACTOR. Bax File Decoder and Data Compressor
33MERQURY.FK. FastK based version of Merqury
33ONEcode. 1-code framework: docs, C-library, and tools
27DASCRUBBER. Alignment-based Scrubbing pipeline
21FASTAN. Fast Tandem Repeat Finder
16DFA-SPEC. The Dagstuhl Format for Assembly
13DAMAPPER. Long read to reference genome mapping tool
13HI.SIM. HiFi error modeler and simulator with ploidy
12PHASE-MERS. Utilities to detect and profile `het-kmers`
12ALNVIEW. A "dot"-plot style viewer for .1aln files
10DAMASKER. Module to determine where repeats are and make soft-masks of said
10GENESCOPE.FK. A derivative of GenomeScope2.0 modified to work with FastK
9DAVIEWER. C
6GFA-spec. Graphical Fragment Assembly (GFA) Format Specification
4STRING.HEAP. String Priority Queues and Empirical Evaluation
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