sunericd

dynamicviz. Jupyter Notebook

spatial_aging_clocks. Repository containing notebooks and scripts associated with spatiotemporal profiling and modeling of brain across adult life

TISSUE. TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty measures for gene expression predictions in single-cell spatial transcriptomics datasets and utilizing them in downstream analyses

dynamic-visualization-of-high-dimensional-data. Jupyter notebooks and Python scripts associated with experiments and analyses presented in "Dynamic visualization of high-dimensional data" by Sun et al. (2022).

SpatialAgingClock. Python

svz_singlecell_aging_clocks. R

SPRITE. Spatial Propagation and Reinforcement of Imputed Transcript Expression

tissue-figures-and-analyses. Jupyter notebooks and scripts for generating data and figures associated with the TISSUE manuscript

CausalInteractionBench.

dnn-illusion. Jupyter Notebook

sprite-figures-and-analyses. Repository containing notebooks and scripts associated with SPRITE figures and analyses

optimal-control-of-aging-in-complex-networks. Jupyter Notebook

physiological-aging-rates. Jupyter Notebook

ISTools. Python