Stefano Mangiola

tidyHeatmap. Draw heatmap simply using a tidy data frame

tidyseurat. Seurat meets tidyverse. The best of both worlds.

CuratedAtlasQueryR. Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.

nanny. A tidyverse suite for (pre-) machine-learning: cluster, PCA, permute, impute, rotate, redundancy, triangular, smart-subset, abundant and variable features.

bioc_2020_tidytranscriptomics. Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap

tidygate. Label elements within user drawn gates

rpharma2020_tidytranscriptomics. R

ppcseq. Probabilistic outlier identification for bulk RNA sequencing data

rladiestunis2021_tidytranscriptomics. R

bioceurope2020_tidytranscriptomics. R

biocasia2020_tidytranscriptomics. R

ABACBS2020_tidytranscriptomics. R

bioc2021_tidytranscriptomics. Dockerfile

tidysc. [Not ready for third party use] A modular framework and a tidy data structure for bulk transcriptional analyses.

single_cell_outliers. R

infiltrating_immune_dataset. Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR

singh_et_al_taurine_bone. R

ARMET. Algorithms for Resolving Microenvironment Transcriptomes

RNAseq-noise-model. R

zhejiang2020. R

reducing-cost-spatial. Reduce the cost burden of spatial transcriptomics through topology subsampling

scib-reproducibility. Additional code and analysis from the single-cell integration benchmarking project

tidyomicsWorkshop_ECCB2024. Tidy genomic and transcriptomic analyses

cellxgenedp. R interface to the cellxgene data portal

cellsig. R