Seth

hck. A sharp cut(1) clone.

crabz. Like pigz, but rust

gzp. Multi-threaded Compression

perbase. Per-base per-nucleotide depth analysis

cargo-bundle-licenses. Generate a THIRDPARTY file with all licenses in a cargo project.

rust-lapper. Rust implementation of a fast, easy, interval tree library nim-lapper

nython. Build Python Extension Modules for Nim libraries.

ponim. Nim + Python + Poetry = :)

rumi. Rust UMI Directional Adjacency Deduplicator

ripline. Fast by-line reader from ripgrep

bam-builder. Wrapper over rust-htslib for building collections of BAM records for testing.

lapper.cr. Crystal port of nim-lapper: a fast genomic intervals query library

proglog. Simple, thread-safe, counter based progress logging

bioinfo_benchmarks. Language benchmarks that are important for Bioinformatics scripting

mojo-lapper. Mojo

nimedlib. Nim wrapper for the Edlib library

timfmt. A small utility for formatting things the way Tim prefers.

error_handling. Some examples of error handling in Rust

readfq. A packaged version of readfq implementation for reading fastq and fastq formatted files.

ScAIList. Rust implementation of an Augmented Interval List, with a scaling factor.

esc. Small CLI for escaping and unescaping characters in strings

interval_bakeoff. Test tool for different interval libraries

dot. data over time

scivs. Collection of Data Structures for working with genomic intervals

levenshtein-distance-benchmarks. Code for "Making rust as fast as go"

IntervalLapper.jl. Julia implementation of nim-lapper, a fast and easy interval library tailored for genomic data.

workwork. Elixir

mojo-demo.

aoc-lisp-rs. A Lisp to use for Advent of Code, written in Rust

aoc-2023. Rust

ivtools. Rust lib for genomic interval tools.

basebits. A memory efficient encoding for short DNA sequences and some associated operations.

rust_zlib. Rust

genomics-secondary-analysis-using-aws-step-functions-and-aws-batch. Python

we-bt. Rust

ny_lapper. Python wrapper around nim-lapper using nython. Currently just a POC

cleanse. Small tool to clean up delimited data to make it consumable by standard unix tools