Sean

protein_scoring. Generating and scoring novel enzyme sequences with a variety of models and metrics

protein_gibbs_sampler. Gibbs sampling for generating protein sequences

esmologs. Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.

hmmer3di. hmmer3 and easel patched to support the 3di alphabet.

proteinotes. Jupyter Notebook

aggrescan3d_py3. Python 3 port of Aggrescan3d