Simon Andrews

FastQC. A quality control analysis tool for high throughput sequencing data

SeqMonk. SeqMonk NGS visualisation and analysis tool

BamQC. Mapped QC analysis program

sradownloader. A script to make downloading of SRA/GEO data easier

nextflow_pipelines. The set of NGS processing pipelines used at Babraham

redotable. A dotplot application for DNA/RNA sequence

virusbreak. A web based game to simulate virus outbreaks

10XQC. A system for monitoring the quality of 10X single cell data

compter. An application to graphically summarise kmer enrichment in a set of sequences

sierra. A sequencing facility LIMS system

bioinformaticsrates. A record of bioinformatics hourly rates for core facilities

illuminaprocessing. The scripts for doing automated run processing from our sequencing facility

RasbellyPi. A custom doorbell application for Raspberry Pi

proteostasis_gpt. A custom GPT for questions about proteostasis

canonicalsplicecount. A program to quantitate RNA-Seq data based on the presence of canonical splice sites

autosftp. An automated data transfer system

autoalign. A web based tool for aligning nanopore PCR fragment sequencing

machinelearning. Code used for the machine learning course

dedupcheck. A quick and dirty check for duplicate files in a large filesystem

dose_response. This is the code which accompanies the demonstration of dose response curve plotting in R which is shown in https://youtu.be/yZRvzYsWqJw

cycledb. A searchable web database of cycle rides

forkcall. A program to call the location of replication forks based on TrAEL-Seq data

celllinesleuth. A program to identify human cancer cell lines from NGS data

christmas2020. The Babraham Bioinformatics 2020 Xmas Card

intensitydiff. An R package to perform the intensity difference statistical calculation

singularityconda. A test of singularity with conda

powerguide. A web based system for guided power analysis

MethExpress. A tool to calculate and visualise relationships between DNA methlyation and gene expression

image-sound-sync. An application to synchronise a set of images with significant events in a sound file