Ryan Layer

samplot. Plot structural variant signals from many BAMs and CRAMs

giggle. Interval data structure

gqt. A genotype query interface.

stix. Structural Variant Index

svv. Stupid Simple Structural Variant View

ssshtest. Stupid Simple (ba)Sh Testing - A functional software testing framwork

ssec2. Stupid Simple Elastic Compute Cloud

cmd2web. Create web interfaces for command line utilities.

cs. Data structures and algorithms

COvid19. Providing social distancing situational awareness during the COVID-19 pandemic in Colorado

set_intersection. Find intersection significance

gql. Python

stix_paper. Analysis for the STIX paper

bedtools. C++

nway. nway

utils. C++

sandbox. To play

tools. Smaller projects

fehh. Fast EHH

sv_graph. SV Graph

vcfanno. annotate a VCF with other VCFs/BEDs/tabixed files

SV-plaudit. Pipeline for structural variant image curation and analysis.

interval_intersection. C

binary_search. C++