Ryan G. Coleman

lotsofcoresbook2code. mirror from http://lotsofcores.com book 2, since dropbox isn't good for everyone

lotsofcoresbook1code. Code repo for lotsofcores.com book 1, here since dropbox doesn't work for everyone

auto-dud-e. Auto-DUD-E is a website for a test set of ligands & decoys for molecular docking.

2D-protein-shape-matching. find 2d views of proteins that look like your favorite shape

mol2db2. mol2db2 is a python program that takes various ligand files and turns them into a .db2 database for docking with DOCK.

traveldistance. Github version of Travel Distance code by me (Ryan Coleman) and my advisor (Kim Sharp). See http://crystal.med.upenn.edu/travel_distance.html for official download, academic paper references, license, etc.

autodock-vina. fork of autodock vina, from http://vina.scripps.edu/

analysis-scripts. Some simple scripts for analyzing lists of data, both paired & unpaired.

Pocket. version of Patrice Koehl's Pocket under LGPL

FindingKnottedAndLinkedVorticityLinesIn3DVectorFields. code from my master's thesis work. has sat in a backup folder for a decade. might be useful? java viewer seems nonfunctional as Java3D seems dead.

plos-words. Inspired by http://rappers.mdaniels.com.s3-website-us-east-1.amazonaws.com/ and Aesop Rock, let's find out who is the wordiest PLOS author

imap-upload. Mirror of http://sourceforge.net/projects/imap-upload/

tdt2014-part2. Scripts, etc., for the Teach Discover Treat Competition, 2014, part 2.

zinc-web. python scripts to talk to zinc

TCP-32764. some codes and notes about the backdoor listening on TCP-32764 in linksys WAG200G.