roblanf

minion_qc. Quality control for MinION sequencing data

sangeranalyseR. functions to analyse sanger sequencing reads in R

sarscov2phylo. Global phylogenies of SARS-CoV-2 sequences

phypapers. How to set up a literature bot on Bluesky

BenchmarkAlignments. Benchmark empirical datasets for phylogenetic method development

minion_multiQC. multi-tool QC for minion data

raspberrytrap.

euc_qc. quality control shell scripts for mapping short-read sequencing data to distant reference genomes

Reputable-Open-Access-Journals. a subjective list of open access journals that have good reputations

SRHtests. tests of stationarity, reversibility, and homogeneity for sequence alignments

pvalues. code to extract p values from open access papers

pcurver. R functions to analyse distributions of p values

concordance_vectors. scripts to calculate and plot concordance vectors

treemaker. make smaller trees out of bigger ones, doing smart stuff along the way

AIPhylo. machine learning for phylogenetics

Workshop-MIG. IQ-TREE workshop at MIG

bacterial-phylo. new phylogenies of bacteria

netcaster. Python framework for evolving neural network architectures

phylofunctions. a collection of often very basic functions for phylogenetic utilities in Python

communitree. analysis of community assembly using phylogenetics in R