College Park, MD

Rob Patro

Elite
@rob-p

Professor @ UMD CS: Algorithms, data structures and inference for high-throughput genomics (and other things I find interesting). I prefer my types static!

www.robpatro.net

FQFeeder. Self-contained, multi-threaded fasta/q parser

50

mcflow. An implementation of implicit curvature flow as described in "Implicit Fairing of Irregular Meshes using Diffusion and Curvature Flow" by Desbrun et al.

24

BooM. A hash map using the BooPHF perfect hash function

13

carlworld-beamer-slide-theme. Carl Compliant Beamer slide theme

10

cpp11fun. A small set of examples demonstrating features of C++11

8

ScalaIntro. A small set of Scala examples & links for a brief Scala introduction given at UMD

3

CSE549F17. HTML

3

genomap. A Rust library for storing generic genomic data by sorted chromosome name

2

simple_btree_sa. Rust

2

cargo-sanitize. Rust

2

minimap2-rs. Rust bindings to minimap2 library

2

memtest. Memory usage for simple tasks in different languages

2

htslibpp. A minimal modern C++ wrapper around htslib

2

rosalind_in_rust. Messing around to get familiar with Rust

2

statrs. Statistical computation library for Rust

2

CMSC858D. Feature rich Jekyll template for academic course websites

2

rob-p.

2

bibget. Generate BibTex entry from a DOI. Written in Rust and based on the doi2bib crate.

2

test_sanitize_workflow. just for testing

1

paraseq. A minimal copy fastq and fasta reader built for parallel support and paired end processing

1

libdivsufsort. A lightweight suffix-sorting library

1

CMSC423_F22_A1_sample. Shell

1

slimgraph. A graph library for scala

1

CSE549F16.

1

epi. A computer scientist's text editor.

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