New York

Robert T. McGibbon

Elite
@rmcgibbo
rmcgibbo.org

slidedeck. Beautiful HTML5 slides in markdown. A easy-to-use fork of the google-io-2012 slide deck

321

npcuda-example. Example python (numpy) -- CUDA installable package with a C-extension library

143

jupyter-emacskeys. Emacs keybindings for Jupyter notebook

89

python-appveyor-conda-example. Demo project for building and shipping Python conda packages with Appveyor CI and Travis CI

67

reftagger. Parse and tag unstructured academic citations.

47

pyhmc. Hamiltonain Monte Carlo in Python

40

logsumexp. Fast SSE logsumexp for python/numpy

30

pyvdwsurface. Molecular (Van der Waals) surface.

20

figshare. Command line client for figshare

19

sphinxcontrib-autodoc_doxygen. Sphinx / Doxygen bridge

15

covar. Compute shrinkage estimates of the covariance matrix

15

sphinxcontrib-lunrsearch. Instant search for Sphinx

14

async-priority-channel. Rust

13

openmm-webbuilder. JS/HTML5 webapp for setting up custom GPU-accelerated OpenMM molecular dynamics simulations.

12

mydra. Python

12

mullermsm. Markov State Models on the Muller potential: a MSMBuilder Tutorial

12

Jarvis. C++

11

resp2. RESP plugin for PSI4

9

r-rmcgibbo. Python

9

openmm-cookbook. A collection of code snippets for doing molecular simulations with OpenMM.

9

execgraph. Parallel execution of shell commands with DAG dependencies

8

msmaccelerator2. Adaptive Sampling Markov State Model Driven Molecular Dynamics

8

qchem-utils. Utilities for working with Q-Chem

7

information. Some information theory stuff -- transfer entropy, etc.

7

openmm-cmd. OpenMM Command Line Application

7

ropen. Rust

5

nixpkgs-hammering-action. Python

5

history. An enhanced history(1) for bash

5

conda-hint. Hint generation for conda resolver.

4

projector. Interactive plotting of MD projections + molecular viewer with HTML5 and WebGL

4

simtk.unit. Python Units

4

pypatchelf. Patchelf utility, packaged for python/pip

4

osprey. osprey is the plumbing for machine learning hyperparameter optimization.

3

idle-trigger. Trigger a command when the CPUs are idle

3

cargo-remote. cargo subcommand to compile rust projects remotely

3

doccheck. Check that docstrings satisfy Numpy format

2

hdf5pickle. Fast persistence of Python objects to HDF5 files

2

sudoku. Haskell Sudoku Solver

2

circular_dichroism. prediction of cd spectra from structures

2

post-build-postgres. Nix post-build-hook to upload to postgresql

2

msmbuilder3. Work on progress for next iteration of MSMBuilder

2

nixpkgs-review. Review pull-requests on https://github.com/NixOS/nixpkgs

2

nixpkgs-hammering-action-example. See https://github.com/rmcgibbo/nixpkgs-hammering-action

2

cache-dash-h. cache the help text for your dog-slow scripts

2

okbot. Respond to OkCupid messages with tweets.

2

nixpkgs-hammering. Beat your package expressions into a shape

1

arduino. Personal arduino projects

1

nix-unsafePlugins. This is unsafe. Don't use it.

1

numpy. Numpy main repository

1

pubchem-utils. Utilities for interacting with PubChem

1

tokio-command-fds. A Rust library for passing arbitrary file descriptors when spawning child processes.

1

numpy-mypy. Python

1

holmes_rubin. Holmes-Rubin EM Estimator for Continuous-Time Markov processes

1

manylinux. Python wheels that work on any linux (almost)

1

gh-util. Github command line utilities

1

python-flake-utils. Nix

1
56
Apply