Richardson Laboratory

reduce. Reduce - tool for adding and correcting hydrogens in PDB files

MolProbity. Protein and nucleic acid validation service

reference_data. This repository contains reference data from the Richardson Lab at Duke.

probe. Evaluate and visualize protein interatomic packing

suitename. Categorize each suite in an RNA backbone as belonging to either one of 53 defined types or as outlier

RNA11. RNA11 dataset PDBs and related files

prekin. Prepare molecular kinemages from protein PDB files

disulfide_research. Tools, scripts, and results for research on disulfide bond geometry

mage. 3d molecular visualization tool

phenix_king_binaries. This hosts static binaries of KiNG for PHENIX. KiNG code is in the javadev repository.

BJH_Dissertation. Python

PDB_mongodb. This is a repository for a python program that does individual runs on deposited pdbs.

rna_precis. Scripts for RNA parameterization. To be folded into cctbx_project when complete.

lab_scripts. Repository for Q&D lab scripting projects; primarily a repository of scripts not history

mon_lib. Shell

Protocol-Captures. Archive of lab protocols

identify_dna_decoys. Code to identify potential purid decoys id DNA, i.e. purines that need to flip from syn to anti or viser versa.

probe_analysis. Tools for analysis and interpretation of Probe output

javadev. Java programs (including KiNG) for protein visualization and analysis

quantitate_density_fit. This tool quantifies density fit.