Sheng Wang

DeepAlign. DeepAlign: the protein structure analysis toolkit

PDB_Tool. Extract structural features from original PDB file

Predict_Property. Predict protein local properties using sequence or profile information.

cwDTW. Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals

RaptorX_Property_Fast. RaptorX-Property: a Standalone Package for Protein Structure Property Prediction

DeepCNF_AUC. Training Conditional Random Fields (CRF) by Maximizing Area Under the ROC Curve (AUC)

DeepBound. Predict the boundary of transcript start and end from RNA-seq reads alignment

TGT_Package. Generate A3M and TGT file from a given sequence in FASTA format.

LIG_Tool. Extract ligands from original PDB file

DeepOpen_source. All relevant source code for protein related tools

cwDTW_nano. Continuous Wavelet Dynamic Time Warping for unbalanced global mapping in nanopore sequencing analysis

Complex_Tool. Extract monomer and contact info from complex PDB file

From_CA_to_FullAtom. Given CA trace in PDB format, restore full atoms

curl_command. CURL command to call RaptorX-Property and RaptorX-Contact locally

DeepSimulator. The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.