Peter Menzel

packCircles. C program for space-efficiently packing circles in a plane.

taxonomy-tools. C++ tools for NCBI taxonomy tasks

download-refseq-genomes. Perl script to download genomes within a clade from NCBI Refseq

kiq. K-mer indexing and querying in RNA-Seq data

gh-actions. workflows for GitHub Actions

plot-samtools-depth. Plot output of samtools depth to postscript

stranded-coverage. Convert bam to two wig files with strand-specific coverage

biq. Tool for indexing and querying back-splice junctions of circular RNAs (circRNAs) in RNA-Seq datasets

sarscov2-analysis-resources.

RILogo. Visualising RNA-RNA interactions

raconnn. wrapper for running multiple assembly polishing rounds with racon

bam-to-clusters. C

illumina-assembly-snake. Snakemake wrapper for bacterial genome assembly from Illumina reads.

Recipes.