Bastian Pfeifer

PopGenome. An Efficient Swiss Army Knife for Population Genomic Analyses in R

GNN-SubNet. Disease subnetwork detection with explainable Graph Neural Networks

HC-fused. Multi-view hierarchical clustering in R

Ensemble-GNN. Ensemble learning with graph neural networks for disease module discovery and classification

DFNET. Network-guided greedy decision forest for feature subset selection

kNN-Genome-Scans. Genome scans for selection and introgression based on k‐nearest neighbour techniques.

TopKSignal. Effective signal reconstruction from multiple ranked lists via convex optimization

TreeSmoothing. Post-hoc Regularization of Tree Ensembles

cpath. Explaining and visualizing black-box models through counterfactual paths

Introgression-Simulation. Introgression Simulation using ms and seq-gen

uRF. Unsupervised Random Forest-based Clustering

BlockFeST. Bayesian calculation of region-specific FST to detect local adaptation

fc-ensemble-gnn. Federated Ensemble-GNN for Feature Cloud

BASIX. C/C++ toolset for R

TopKGraphs. Jaccard-Biased Random Walks with Rank Aggregation for Robust Node Affinities in Graphs