Adrian Viehweger

uv. Finding prophage regions in bacterial genomes using brute force

darkq. A message queue for genomic surveillance

nanotext. Proteins as words, genomes as documents.

ideel. Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes

faltwerk. A library for spatial exploratory data analysis of protein structures

foldvis. Protein visualization without the pain

thinspace. A taxonomy-free method to dereplicate massive genome collections

zoo. A portable datastructure for rapid prototyping in (viral) bioinformatics (under development).

panprimer. Design strain-specific primers from pangenomes

boxes. virtualbox + vagrant + ansible = freedom

primer4. Validating mutations without the pain

adaptive. Supporting information for a study on adaptive nanopore sequencing

learning-machine-learning. A self-help seminar for people with mild to severe machine learning disabilities.

json2csv. command line tool to convert json to csv

peek. small set of utilities to peek at sequencing results

primer. Automatic primer design for variant validation

pdb-tools. A dependency-free cross-platform swiss army knife for PDB files.

clonepool. Increased PCR screening capacity using a multi-replicate pooling scheme

nanoflow. Bioinformatics pipeline for nanopore sequencing data

ibm3202. Google Colab Tutorials for IBM3202

nanoql. A DSL to query sequence databases based on GraphQL.

prime. small command-line tool to deal w/ many primers during PCR setup