Fred

Open-dLLM. Open diffusion language model for code generation — releasing pretraining, evaluation, inference, and checkpoints.

faplm. FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models

Awesome-Mamba. Awesome list of papers that extend Mamba to various applications.

self-taught-CS. The notes and Lab code of public courses I have taken.

ab_opt. Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.

Awesome-Computational-Structural-Biology. A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.

protein-sequence-diffusion-model. diffusion model for protein sequence generation

Benchmark-Traffic-flow-prediction-. curated baselines and evaluation metrics to benchmark the task traffic flow prediction

spatial-temporal-transformer. traffic flow prediction

Flash-Attention-with-Bias-Triton. Triton Implementation of Flash Attention with Bias.

Path-Planning. Python package for P2 (Path Planning), a masked diffusion model sampling method for sequence generation (protein, text, etc.).

Awesome-List-Protein-Binding-Site-Prediction-. List of papers on protein binding site prediction

ab_rmsd. Calculate the RMSD between two antibody structure (including nanobody and antibody).

Coupling-Models. Python

one-python-craftsman. 来自一位 Pythonista 的编程经验分享，内容涵盖编码技巧、最佳实践与思维模式等方面。

PAPL. Minimal PyTorch implementation of Planner Aware Path Learning (PAPL) for diffusion language models, from our ICLR 2026 paper.

superpowers-ml. Skills that make your AI agent do ML research like a skeptical scientist, not a hype machine.

AI-assisted-subway-surfers. Use pose estimation to play the game subway-surfers

sudoku. Python

genetic-algorithm-pytorch. Toy genetic algorithm in Pytorch

Stable-Terminal. Your AI assitant in the terminal

Memo. A Personal Memorizing App

pymol_color_by_lddt_af2_style. Python

Notes-of-MIT-Deep-Learning. My course notes of 2021 MIT 6.S191 Introduction to Deep Learning.

discrete_normalizing_flow_text8. Python

ENAR26-Course-Homepage. CSS