Giessen, Germany

Oliver Schwengers

Expert
@oschwengers

Microbial bioinformatics, WGS bacteria, plasmids, PostDoc, father of 2, husband, astrophotographer

bakta. Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

664

platon. Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

124

referenceseeker. Rapid determination of appropriate reference genomes.

102

asap. A scalable bacterial genome assembly, annotation and analysis pipeline

79

tadrep. Targeted Detection and Reconstruction of Plasmids

22

ANIclustermap. A tool for drawing ANI clustermap between all-vs-all microbial genomes using fastANI & seaborn

4

oneliners. Useful bash one-liners for bioinformatics.

3

Awesome-Bioinformatics. A curated list of awesome Bioinformatics libraries and software.

3

fastp. An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

1

mummer2circos. Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments

1

py_nf. Python library to execute batches of jobs using nextflow.

1
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