Bhavya Papudeshi

Kraken2-output-manipulation. Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each column is number of reads that were rooted to this taxon (column 2 in summary)

baczy. Bacterial genome analysis workflow that identifies antibiotic resistance, defense mechanisms, virulence factors, prophages, and capsule-related genes.

Metagenome-assembled-genomes-workflow. Workflow to build metagenome assembled genomes (MAG) from shotgun sequenced metagenomes.

bacterial-genome-assembly. Scripts and code used for genome assembly of bacterial sequences

Scripts. Take output from multiple samples and adds them to one table at the end