Isaac Turner

BitArray. C bit array structs and methods

seq-align. Fast, portable C implementations of Needleman-Wunsch and Smith-Waterman sequence alignment

sort_r. Portable qsort_r / qsort_s

jelly-hash. Low memory multithreaded hash table

msg-pool. Multiple Producers / Multiple Consumers Message Passing Pool

string_buffer. libstrbuf: A powerful string library for C

seq_file. Library for Reading Bioinformatic Sequence Data in C

carrays. Algorithms that work on generic C arrays

madcrowlib. Common C data structure macros

biogrok. Bash scripts for everyday bioinformatics

UtilityLibrary. C Code for Good Housekeeping

CortexLib. Library code for handling data from the cortex variant caller

readsim. Simulate DNA sequencing reads using real reads

cpp_priority_heap. Simple priority heap with updatable priorities in c++11

bioinf-perl. Perl libraries and scripts for everyday bioinformatics tasks, including VCF, FASTA & FASTQ handling

cortex_binary_reader. Read cortex graph files (historic page, use McCortex view instead)

GenomeDensity. Density of events around objects on a genome

pyRBT. Red Black Tree in Python

strtools. Small command line tools for manipulating strings

vcf-slim. Light weight VCF annotation and filtering

GFA-spec. Graphical Fragment Assembly (GFA) Format Specification

thumper. A small tool to check file systems

vcf-hack. Hack-y C programs for modifying VCF files

dotfiles. Useful bash scripts for your .profile file