Li Song

Expert
@mourisl

Assistant Professor at the Department of Biomedical Data Science at Dartmouth. Interested in designing algorithms and developing bioinformatics methods.

T1K. T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.

107

Lighter. Fast and memory-efficient sequencing error corrector

96

centrifuger. Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.

95

Rcorrector. Error correction for Illumina RNA-seq reads

66

Rascaf. Scaffolding with RNA-seq read alignment

21

MSAplot. Plot multiple sequence alignment (MSA)

17

CLASS. Constraint-based Local Assembly and Selection of Splice variants

6

pvalannot. Add p-value annotation to the plot

4

heatmapannot. Add color heatmap to seaborn heatmaps

4

chromap. Fast alignment and preprocessing of chromatin profiles

3

Tools. Random small scripts

2

centrifuger_evaluations. Jupyter Notebook

1

T1K_manuscript_evaluation. The scripts used in the T1K manuscript

1

DotGroupPlot. Jupyter Notebook

1

mourisl.github.io. HTML

1

Lighter_paper. Lighter's paper

1
16
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