Marcin Magnus

Pocket-Plus-Calibre-Plugin. 📚 Modified version of the Calibre plugin for Pocket. Now, you get your articles organized by your Pocket tags, and more!

rna-tools. 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

emacs-grammarly. an Emacs extension to send a text to/from Grammarly

geekbook. G33KB00K3 - fun to read & fun to write -- 🤓 eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://geekbook.rtfd.io = beautiful html generator of your markdown-based notes

pubmex. get full paper names for downloaded publications automatically

awesome-rna-3D-tools. awesome tools for RNA

RNA-Structural-Bioinformatics-Crash-Course. RNA Structural Bioinformatics Crash Course & Data Science in Python

EvoClustRNA. RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io

emacs-pdb-mode. pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.

EmacsOrgModeClockingXBar. see what you are working on with XBar, Conky ;-) [if using emacs/orgmode/clocking] + alternatives

RNA-Puzzles-Standardized-Submissions. Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip

garmin2orgmode. garmin2orgmode - Send your Garmin activities to OrgMode (on macOS)

emacs-env. I've been using Emacs for over 17 (since 2007) years now. This's my config file :-) it might be useful for someone. http://mmagnus.github.io/emacs-env/

OrgModeClocking2Calendar. one way synchronization of your clocking (time tracking) entries from OrgMode Emacs

PyMOL-QuickLook. Python

orgmode-capture-all. Capture ALL (with a right click) to OrgMode Inbox

boox-wifi-mount-sync. boox-wifi-mount-sync - sync or mount your Boox device over WiFi

PyMOL4Spliceosome. Structures of the spliceosome processed to be easily viewed with PyMOL

PocketX-Calibre-Plugin. PocketX-Calibre-Plugin is an experimental version of Pocket-Plus-Calibre-Plugin (send articles from Pocket to your e-reader)

rna-tools-webserver-engine. The light-weight, complete webserver engine used by me for servers: RNA/DNA-protein docking method http://genesilico.pl/NPDock, RNA 3D structure prediction method http://iimcb.genesilico.pl/SimRNAweb/, RNA 3D quality control, http://iimcb.genesilico.pl/mqapRNA/, building RNA models from recurrent 3D motifs http://genesilico.pl/rnamasonry

yeast-spotifier. spotifier - a script to process yeast plate images into figures, without fancy Deep Learning ;-) (yet)

h2o_utils. 🔧 H2o utils: save/load models to your H2O session

do-science-covid-faq.

borg-search. Tools search borg archives/repos (also to search big files to remove them)

mmfinder. mmfinder

diffpdb. diffpdb - a simple tool to compare text-content of PDB files

emacs-toggl. a simple plugin to work with toggl

Xfind. 🔎 a command tool for searching on your eXternal machines (VM etc) and drives

scanify. Scanify (and resize if needed) your pictures/screenshots

garmin2calendar. garmin2calendar - Send your Garmin activities to Calendar (on macOS)

principal_axes_of_RNA. Program to compute and display principal axes of a RNA (or any molecule).

rna3db. A dataset for training and benchmarking deep learning models for RNA structure prediction

samochodoza.

geekbook-export.