Tenure-track Investigator at NCI. I work on building algorithms for computational genomics.
Flye. De novo assembler for single molecule sequencing reads using repeat graphs
946Ragout. Chromosome-level scaffolding using multiple references
169maf2synteny. A tool for recovering synteny blocks from multiple alignment
33pbclip. A simple tool to fix PacBio fasta/q that was not properly split into subreads
16jax-meta-tutorial. Metagenome assembly tutorial, JAX long-read sequencing workshop 2022
9Nano-Align. Angorithms for protein identification using a sub-nanopore
6trapezoid_map. Useless implementation of trapezoidal map search structure
3ig-corrector. A tool for immunoglobulines NGS data processing
2card_workflows. WDL workflows for the NIH CARD long-read sequencing project
2debrujin. Useless debrujin graph implementation
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