David W. McKellar

scMuscle. The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcriptomic data

STRS. Suite of analysis tools for spatial total RNA-sequencing

slide_snake. Snakemake pipeline for the preprocessing, alignment, QC, and quantification of spatial transcriptomics data - both short-read and long-read

scMuscle2. Curation and analysis of skeletal muscle single-cell data across species

ref_snake. Snakemake workflow to automatically build and organize reference genomes for common alignment tasks

scCardiacOrganoid. Time-resolved analysis of iPSC-derived cardiac organoids

seutils. Utility functions for Seurat

DWM_utils. Tools, wrappers, utilities, and resources for handling single-cell and spatial transcriptomics data

txg_snake. Snakemake workflow for the alignment, QC, and quantification of all types of 10x Genomics data