MASA UEHARA

RLfinetuning_Diffusion_Bioseq. Code for the tutorial/review paper for RL-based-fine-tuniing. In this code, we especially focus on the design of biological sequences like DNA (enhancers) and RNA (UTRs) design.

AlignInversePro. Inference-Time Alignment in Protein Diffusion Models

SVDD. Derivative-Free Guidance in Diffusion Models with Soft Value-Based Decoding. For controlled generation in DNA, RNA, proteins, molecules (+ images)

ProDifEvo-Refinement. Evolutionary Algorithm with Diffusion Models for Protein Design

SVDD-image. Derivative-Free, Training-Free, Guidance in Diffusion Models