Mark Keller

awesome-biological-visualizations. A list of web-based interactive biological data visualizations.

vueplotlib. Declarative, interactive, linked 📊📈 components

anyhtmlwidget. Bringing core concepts from anywidget to R

dynamic-importmap. Rewrite bare import specifiers at runtime in the browser

use-coordination. Implement coordinated multiple views in React-based visualization systems.

snippets. Things that I find myself googling repeatedly

tfjs-umap. JavaScript

esbuild-py. Python bindings to the esbuild Transform API

pnpm-monorepo-example. Opinionated example repo containing library + demo site + documentation site

protobuf-py-to-js. Testing usage of protobuf for sending data from python server to javascript client

visium-dlpfc-processing. Jupyter Notebook

miqc-py. Python implementation of miQC: probablistic quality control of scRNA-seq data

spatialdata-uv-install-test.

anndata.js. AnnData for the browser

marimo-altair-scratch. Python

us-maps. JavaScript

hd-vis-scripts. Download the full Semantic Scholar academic graph, then insert into an SQL database

use-coordination-solid. TypeScript

harvard-gsas-thesis. A LaTeX class for publising a PhD thesis according to Harvard GSAS requirements

qdpx-to-json. Convert REFI-QDA .qdpx file into JSON and PNG files

explosig-v4. JavaScript

vueplotlib-examples. Vue

vitessce-snakemake. Snakemake wrappers for Vitessce