Naarm(Melbourne) AU/Tübingen, DE

Dr. K. D. Murray

Expert
@kdm9

Director, Gekkonid Scientific P/L Genomics; Bio/Ecoinformatics Also with Detlef Weigel @ MPI Tübingen and formerly ANU, Canberra

kdmurray.id.au

kWIP. De novo estimates of genetic relatedness from next-gen sequencing data

46

axe. Rapid competitive read demulitplexer. Made with tries.

23

SRApy. SRA python tools

11

hail. Hail: extract lines from a file, a la `head -n x | tail -n y`

9

seqhax. Small sequence analysis tools that don't deserve their own repos.

8

blindschleiche. 31 bioinformatics utilities in a trenchcoat

7

Acanthophis. A comprehensive, opinionated plant metagenomics and variant calling pipeline in Snakemake

7

clogged. Tiny, configurable, pretty C logging library

6

NVTK. Tools for managing natural variation collections

4

2020_snakemake-workshop. Shell

4

bioscripts. A Collection of Bioinformatic Scripts

3

pbshax. Python

2

usc-demo. Demo of the userspace containers project at the Common Workflow Language

2

pandoc-notes. Take notes using vim, pandoc, xetex and vim-pandoc

2

snakemake_executor_plugin_mpcdf. snakemake_executor_plugin_mpcdf

2

raugraf. Python

2

goleft. goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

1

Flye. Fast and accurate de novo assembler for single molecule sequencing reads

1

libqcpp. libqc++: C++11 library for next-gen sequence quality control and assessment.

1

kdm-tor. My UNOFFICIAL dev branch of tor. See torproject.org for the real thing

1

PaneucalyptShortReads. Python

1

texlive-local. Dummy package to allow texlive to be installed locally

1

pyNGSQC. A pure-python next-gen sequencing quality control library, and soon to be command line tool

1

kdmRutil. R

1

venv.jl. Python-style virtual environments in Julia

1

gdmhelpers. R

1

boringLD. R

1

libngs. The Nifty GNU Sequence Library

1

gbstrim. Trim GBS reads of adaptors and reduce over-inflation of allele counts.

1

panjournal. Pandoc templates meet journal latex templates

1

cutadapt. cutadapt removes adapter sequences from DNA sequencing reads

1

biozsh. the z in bioinformatics

1

euc-dp15-workspace. R

1

FastaSanitiser. A python class/cli to sanitise fasta IDs to something sane, then back again. Lookin' at you, gisaid_sequences.fasta

1

raijin-ansible. Configure and install group-wide software modules on Raijin using ansible

1

kmer-distance-workshop.

1

2020_hpa-geogenet. R

1

onlign. Online alignment prototypes for ANU improvements to AUGUR

1
38
Apply