Kez Cleal

gw. Genome browser and variant annotation

dysgu. Toolkit for calling structural variants using short or long reads

superintervals. Fast interval intersection library

pywfa. Python wrapper for wavefront alignment using WFA2-lib

SV_Benchmark_CMRG_GIAB. Structural variant benchmark

svbench. Benchmark structural variant calls against a reference set

gwplot. Plot genomics data fast

SV_benchmark_PacBio_HiFi. Structural variant benchmark using PacBio HiFi reads

superintervalsr. Fast interval intersection queries

kmerhash. Convert python string to hashed kmers and back again

zights. htslib for the zig build system

RemoveCramTags. Quickly remove tag(s) from SAM/BAM/CRAM files

sortedintersect. Fast intersection of sorted reference intervals

fnfi. fnfi is a set of tools for aiding split-read alignment and identify structural variants

ref_genomes. A collection of reference genomes

dodi. Cython