Kai Blin

ncbi-genome-download. Scripts to download genomes from the NCBI FTP servers

ncbi-acc-download. Download files from NCBI Entrez by accession

vim-fountain. A VIM syntax highlighting plugin for the Fountain screenplay format

mockaioredis. Mock library to replace aioredis during unit tests (RETIRED)

covid-spike-classification. Detect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.

svgene. SVGene, an SVG gene cluster visualization library in JavaScript

supybot-gsoc. A collection of patches used to pimp gsocbot, the supybot of #gsoc

bioperl-hmmer3. BioPerl modules for HMMER3

fancy-prompt. An /etc/profile.d settings file creating a fancy prompt.

merge-gbk-records. Merge multiple GenBank records using a defined spacer sequence

flask-downloader. Allow a Flask web app to download files on behalf of the user

nrps-rs. A Rust reimplementation of NRPSPredictor2

glimmerhmm. GlimmerHMM git repository

gecco2as. Small script to convert GECCO result tables into antiSMASH sideload JSON files

biopython. Official git repository for Biopython (converted from CVS)

py3-kkdcp. Python 3 asyncio Kerberos Key Distribution Center Proxy server

nrpys. Python bindings for nrps-rs

around-the-world. Code to run the beaglebone-driven world map for Around the World in 80 Days

go-kkdcp. Go implementation of a Kerberos Key Distribution Center Proxy

patscanui. A comfortable web interface for PatScan

bioconda-recipes. Conda recipes for the bioconda channel.

mentor-summit-2019. A central place to keep notes, the schedule etc. of the 2019 GSoC mentor summit

swc-shell-novice. Python

GSoC-SWAT. Samba Web Administration Tool Development

rust-kkdcp. A Rust implementation of MS-KKDCP

rpi-temp-monitor. 1-wire temperature monitoring for the Raspberry Pi

python-mibig. Python handling of MIBiG data

antismash. antiSMASH

spire. Search for Prokaryote Iron Response Elements

ncbi-entrez-error-messages. A collection of error messages returned by NCBI Entrez

docker-debian. Go

jsbio. A collection of JavaScript functions for biology applications.

dna-flipper. A tool to flip GenBank format DNA records to make sure genes of interest are on the right strand.

genomedb-py. A tool to manage and use some metadata around NCBI GenBank genome files

asdb-api. This is a port of the antiSMASH DB backend into Rust.

asproxy. Small reverse proxy to sidestep some networking issues.

statusbot. A command-line to twitter tool I use to let my servers tweet their status.

match-ids. Match IDs (or more precisely locus_tags) between two GenBank files.

rna_extract. Extract tRNAs and rRNAs from sequences identified by NCBI GenBank ID

ipinfo. A small IP address echo server for use with a dynamic DNS change script.

vim-makegreen. MakeGreen runs make and shows a red or green message bar for success/failure. Speeds the red-green-refactor cycle!

contorted. Automatically exported from code.google.com/p/contorted

bioperl-run. BioPerl wrappers

bioperl-live. Core BioPerl code