jsa-aerial

hanami. Interactive arts and charts plotting with Clojure(Script) and Vega-lite / Vega. Flower viewing 花見 (hanami)

saite. Interactive document creation for exploratory graphics and visualizations. 咲いて (in bloom). Built on top of hanami vega/vega-lite library with CodeMirror and self hosted ClojureScript

hanasu. A very light weight, simple websocket based messaging system in Clojure(Script). Converse/talk 話す(hanasu).

DMM. Data Flow Matrix Machines. Generalization of recurrent neural networks.

aerobio. Extensible full DAG streaming computation server with services and jobs for RNA-Seq, Tn-Seq, WG-Seq and Term-Seq.

aerial.utils. Various utility functionality covering common tasks; trees; clustering; graphs; probability, stats, and information theory, et.al.

gaisr. Genomic Analysis Illuminating Structured RNA

js-local-bam. Javascript local BAM and BAI index file parsing and processing

js-local-vcf. Javascript local VCF and Tabix index file parsing and processing

JS-Binary-VCF-Tabix. JavaScript BGZF VCF and binary Tabix readers

bbhanami. Bare Bones example Hanami client/server app

jsbgzf. Javascript bgzf inflation and deflation

clj-iobio. A robust, flexible, full program DAG, declarative tool definition, extensible toolset iobio server in Clojure. With function nodes, streaming and non streaming flow, dynamic caching, logging, and superior error handling.

aerial.bio.utils. Various bioinformatic general utility tools for unified file reading, sequence xform, sequence entropy information processing , et.al.

pyhanasu. Hanasu for Python

aerosaite. Saite delivered as self installing / running uberjar

msgpacket. Client<->Server/Peer<->Peer message protocol and implementations

Scribl. bioinformatic canvas-based chart library

Aerial. Aerial graph/model db