Jakob Nikolas Kather

MSIfromHE. predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer

DeepHistology. A pan-cancer platform for mutation prediction from routine histology

ColorDeconvolutionMatlab. A Matlab implementation of Ruifrok's color deconvolution algorithm.

deep-stroma-histology. Convolutional neural networks for extracting a "deep stroma score" from histological images of human cancer

histology-multiclass-texture. Texture analysis in colorectal cancer histology

immuno_literature. Cancer immunotherapy literature analysis (PubMed papers and registered clinical trials)

histopathology-snippets. Code snippets for histopathology.

histoGAN. Generative adversarial networks for histology images

immunoABM. an agent-based model of tumor cell - immune cell interactions

new-colors-histology. Source codes for: "New colors for histology: optimized bivariate color maps increase perceptual contrast in histological images"

immuneTopography. Analyze topography of tumor-infiltrating immune cells in histological images (QuPath/Matlab)

new-colors-histology-website. This is the website for our project on bivariate colormaps in histopathology

immunoABM3D. 3D agent-based model of human colorectal cancer