Portland, OR

Joseph Fass

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@jfass

apc. (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join

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compass. Perl / R scripts to COMPare a DNA sequence ASSembly to a trusted reference sequence

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seqHelpers. various Perl, Python, and other scripts to help manipulate high throughput sequence data

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PBcR-testing. framework for testing various strategies related to correction of PacBio reads (via Illumina reads) and subsequent use in assembly

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