John Blischak

smk-simple-slurm. A simple Snakemake profile for Slurm without --cluster-config

singleCellSeq. Batch effects and the effective design of single-cell gene expression studies

r-project-workflows. List of workflow tools for R projects

git-for-science. A quick introduction to version control with Git and GitHub

reproducible-research-ctv. **Archived** CRAN Task View: Reproducible Research

singlecell-qtl. Discovery and characterization of variance QTLs in human induced pluripotent stem cells

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fucci-seq. Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

tbd. To be determined... -> TB Dissertation

ctv-project-workflows. R Task View: Project Workflows

giladlab-midway-guide. Guide to using RCC Midway

cardioqtl. R

workflowrBeta. The beta release of workflowr

tb-suscept. Predicting susceptibility to tuberculosis based on gene expression profiling in dendritic cells

2016-09-14-introR. Website for 2016 UChicago BSD Introduction to R Workshop

filter_probes. Filter Illumina HT-12 v4 probes for presence of HapMap CEU SNPs

repdoc. Package for testing workflowr features

jdb-conda. Scripts, recipes, and docs for maintaining Conda packages

blog.jdblischak.com. My blog

midway-subread-pipeline. Process RNA-seq data with Subread on RCC Midway

2016-09-15-chicago. Website for 2016 Software Carpentry workshop for UChicago BSD

ci4r. Demonstrate CI testing for an R package

r-intermediate-altmetrics. A 2-day workshop on intermediate-level programming with R

stanford-stats352-reproducibility. Demonstration of reproducible workflows for Stanford STATS 352

snakemake-novice-bioinformatics. Introduction to Snakemake for Bioinformatics

TileDB-Vector-Search. Cloud-native vector similarity search and storage with efficient, serverless scale-out