Jakob Nybo Andersen

hardware_introduction. What scientific programmers must know about CPUs and RAM to write fast code.

alen. Simple terminal alignment viewer

ErrorTypes.jl. Rust-like error types in Julia

Probably.jl. Probabilistic data structures in Julia

ScanByte.jl. Find your bytes. Fast.

MinHash.jl. Fast and generic implementation of the minhash algorithm

StackCollections.jl. Fixed-bit collections in Julia

LibDeflate.jl. Julia bindings for libdeflate

julia_async. Introduction to aync in Julia

MojoFQBenchmark. Source code for Mojo FASTQ benchmark

automa_tutorial. Tutorial for Automa.jl - a Julia parser generator

julia_bio_phdcourse. Introduction to BioJulia for students studying Julia

BinBencher.jl. Command-line interface for BinBencherBackend.jl

AoC2021. Advent of Code 2021 in Julia

advent2020. Advent of code 2020

vamb. Variational autoencoder for metagenomic binning

ASCIIStrings.jl. Julia strings guaranteed to be ASCII

GenBankFeatureTables.jl. Parser for GenBank Feature Tables

FluPhylogeny. Influenza phylogenetic pipeline

AoC2022. AoC2022 in Julia

CodecBGZF.jl. BGZF codecs for TranscodingStreams.jl

BadBio. Convenience code for bioinformatics, written badly in Julia

StringNewTypes.jl. A macro for the newtype pattern for strings

Influenza.jl. Common types and functionality for influenza analysis

BioNumerics.jl. Various tools for interfacing with BioNumerics

FMIndexes.jl. FM-index for full-text search

KMATools.jl. Tools for parsing KMA output

NCBIInfluenzaData.jl. Package for parsing NCBI influenza data

BlastParse.jl. Simple function to parse BLAST tabular output

paper_binbencher. Code needed to reproduce results of BinBencher paper

advent2021. Advent of Code 2021

Pkg.jl. Pkg - Package manager for the Julia programming language

MathTeXEngine.jl. A latex math mode engine in pure Julia.

palma2022_julia. Julia introduction for Pythonistas

fastqfilt. Filter fastq files

2021_h3n2. 2021 H3N2 project

ORFFinder.jl. ORF finding in Julia (WIP)

investigate. Create templates for scientific projects

latency-history. Script for data in https://viralinstruction.com/posts/latency/

VetLIMS.jl. Package to interface with VetLIMS

2020hpai. Code for 2020 HPAI Denmark paper

advent2018. Rust

Automa.jl. A julia code generator for regular expressions