Jared Andrews

awesome-bioinformatics-benchmarks. A curated and summarized list of bioinformatics bench-marking papers and resources.

kenpompy. A simple yet comprehensive web scraper for kenpom.com.

Genotify. A minimal desktop app for easy and convenient gene annotation and lookup.

CRISPRball. An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.

pytfmpval. Python bindings for the TFM-Pvalue program.

OneLinerOmics. One liner analyses and visualizations for bulk RNA-seq and ChIP-seq data

ECLIPSE. An R package for classifying, comparing, and investigating sub-region structural changes of (super) enhancers (or other large domains).

EZscRNA. Convenient, high-level functions for EZ(-er) scRNA-seq analysis

iBET. interactive Bioinformatics Exploratory Tools

STRprofiler. A python package, command-line tool, and Shiny application to compare short tandem repeat (STR) profiles.

VAMPIRE. Variant and Epigenetic anNotation for Underlying Significance and Regulation

CRCminer. Jupyter Notebook

Pipelines. Because backups and revision history are good things.

VizModules. An R package offering flexible yet comprehensive Shiny Modules for common plot types, designed to serve as building blocks for apps and a base for more complex/specialized modules.

rosewater. Expression-aware gene assignment to ROSE output

celldex. Collection of cell type reference datasets.

j-andrews7.github.io. Personal Website

KnowledgeDump. Gotta keep the brain empty to learn more. This is my easily digestible backup.

ChroSearch. Backup