Zamin Iqbal

Mykrobe-predictor. Antibiotic resistance predictions in minutes on a laptop

cortex. reference free variant assembly

eval_wgs_for_public_health. Datasets, truthsets, auto-analysis for evaluating WGS pipelines for public health needs. Starting with TB

good_background_papers.

useful_R. Stuff I want to be able to find

poligraph. Polish a nanopore assembly using Illumina reads

toypy. Old man slowly learns Python; place I can ask basic questions

pg. Playground. trying out stuff I want to learn or used to know

allele_validator. Simple measurement of true positive call ratio from a VCF file: map alleles to a truth assembly

ASM_NGS_conf_report. HTML

mwsfs. messing with baumdicker dispensable gene sfs

templates. Basic templates for scripts

ASM_rapid_ngs_challenge_2015. Repository for what we did for our entry, and how to reproduce it

outbryk. Shell

wt_nanopore. Private repo for shared scripts/programs for analysing Oxford Nanopore data

schemas. Work on data models and APIs for Genomic data.