Iain Marshall

robotreviewer. Automatic synthesis of RCTs

robotreviewer_old. Automatic Risk of Bias assessment

robotsearch. Machine learning RCT classifier

trialstreamer. Living database of randomized controlled trials (RCTs)

cochrane-nlp. files for systematic review automation project

picotron. clinical answers from systematic reviews

cochrane-nlp-experiments. Python

trialstreamer-demo. a demo website which uses the trialstreamer database (via the API)

robotsearch-backup. Machine learning search filters

kerastext. some tools to help with text CNNs in keras

pdftabledata. code for distantly supervising PDF section labelling from PubMed Central XML

robotevidence. Living database of health evidence

rrlive-ui. RobotReviewer Live user client

rapid_review_simulation. Statistical code associated with the paper "Do rapid review methods for study identification affect meta-analysis results?—a simulation study

covidqa. HTML

pianoteq-pi. A quick way to install Pianoteq and tweak your system on Raspberry Pi ⚡️

ictrp-retrieval. Retrieve and normalize records from ICTRP

academic-kickstart. Shell

rrlive-server. RobotReviewer LIVE server

python-markdown2. markdown2: A fast and complete implementation of Markdown in Python

risk-of-bias-paper. TeX

ijmarshall.github.io. my web page

alot. commandline MUA based on notmuch and urwid

grobid. A machine learning software for extracting information from scholarly documents

pixyll. A simple, beautiful Jekyll theme that's mobile first.

pandoc. Universal markup converter

progressbar. simple python progress bar with timer

pandoc-templates. Templates for pandoc

srtools. core tools for systematic reviews NLP

parsimonious. The fastest pure-Python PEG parser I can muster

minimal-mistakes. :triangular_ruler: A flexible two-column Jekyll theme. Perfect for personal sites, blogs, and portfolios hosted on GitHub or your own server.

nltk. NLTK Source

vortext-demo-1. Vortext viewer with custom topologies, for prototypes & demos

pymetamap. Python wraper for MetaMap

dataset. Easy-to-use data handling for SQL data stores with support for implicit table creation, bulk loading, and transactions. Dataset also includes support for freezing data to CSV and JSON flat files.