Robert Haase

stackview. Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets

BioImageAnalysisNotebooks. Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more

bia-bob. BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.

git-bob. git-bob uses AI to solve Github-issues. It runs inside the Github CI, no need to install anything on your computer.

blablado. blablado is an extensible Assistant that listens to your voice and can execute custom Python functions you provided. It can speak as well.

apoc. Accelerated Pixel and Object Classifiers (APOC)

napari-skimage-regionprops. Feature extraction for labeled objects in images using regionprops from scikit-image

devbio-napari. Python

napari-accelerated-pixel-and-object-classification. GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.

napari-assistant. Jupyter Notebook

imagejmacromarkdown. Generate markdown notebooks from ImageJ Macro

napari-segment-blobs-and-things-with-membranes. A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.

napari-process-points-and-surfaces. Process and analyze surfaces using vedo in napari.

story-writer. An AI-based story writer and Python library which uses OpenAI's chatGPT and Dall-E to generate PDFs with a story and a picture from a prompt and writes them into a PDF.

human-eval-bia. Benchmarking Large Language Models for Bio-Image Analysis Code Generation

awesome-napari-plugins-that-are-not-on-the-napari-hub-yet. Jupyter Notebook

napari-simpleitk-image-processing. Process images using SimpleITK in napari

napari-cupy-image-processing. Python

translate-pptx. translate-pptx is a command line tool that translates PowerPoint PPTX files from one language to another.

napari-plot-profile. Python

the-segmentation-game. Gamified image segmentation quality estimation

natari. Napari gaming

napari-workflow-optimizer. Optimize image processing workflows in napari

I2K2022-napari-workshop. Jupyter Notebook

bia-bubbles. Solve bio-image analysis puzzles!

napari-brightness-contrast. Python

napari-workflows. Python

napari-script-editor. A python script editor plugin for napari

run_jython_scripts_from_ide. Blog post: How to develop ImageJ Java plugins and Jythons scripts simultaneously from your IDE

unprompted. An AI-assistant which gives unprompted feedback about code helping you to write better code in Jupyter notebooks

napari-workflow-inspector. Inspect relationships between napari-plugins in active workflows.

napari-blender-bridge. Transfer surface layers between Napari and Blender.

bia-tischi. Python

napari-time-slicer. A meta plugin for processing timelapse data timepoint by timepoint in napari

cli-bob. cli-bob uses AI to generate command line code in case you can't remember the exact syntax.

prompting-pptx. Generate PowerPoint files using chatGPT and Dall-E