Gökçen Eraslan

awesome-deepbio. A curated list of awesome deep learning applications in the field of computational biology

SparseMax.torch. Implementation attempt of "From Softmax to Sparsemax: A Sparse Model of Attention and Multi-Label Classification"

neuralnet_countmodels. Count models with TensorFlow and Keras

dietnet. Diet networks in TensorFlow

fit_nbinom. Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B

dnaconvnet-notebook. Jupyter notebook for the application of convolutional neural nets to toy DNA sequence data

biorxiv-sanity-preserver. Web interface for browsing, search and filtering recent biorxiv submissions

pyannotables. Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)

pytelegram. Telegram Python bindings based on CFFI and vysheng's TGL

tensorsne. Fast Barnes-Hut t-SNE with Tensorflow integration

opentargets-genetics-python. Python wrapper for the Open Targets Genetics GraphQL API

rcppleveldb. Rcpp bindings for Google's leveldb

Dizimag. Dizimag addon for XBMC

sctoolkit. Python

googplot. Simple HTML chart generator using Google Chart API

deepWAS. Implementation of the DeepWAS workflow

pathview. This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/pathview.html Contributions: http://pathview.r-forge.r-project.org/. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=pathview.

fit_mvpolya. Dirichlet-Multinomial (Multivariate Polya) Maximum Likelihood Estimate in Python

keras. Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on TensorFlow or Theano.

ProDy. A Python Package for Protein Dynamics Analysis

scanpy-tutorials. Scanpy Tutorials.

hSBM_Topicmodel. Using stochastic block models for topic modeling

gokceneraslan.github.com. Blog repository

scanpy. Single-Cell Analysis in Python. Scales to >1M cells.

magma-phenotype-similarity. Jupyter Notebook